Cellpose-SAM for cellular segmentation
[paper]
[github]
[talk]
You may need to login/refresh for 5 minutes of free GPU compute per day (enough to process hundreds of images).
Input
Drop Image Here
- or -
Click to Upload
max resize
max iterations
Multi-file upload (png, jpg, tif etc)
Run Cellpose-SAM
Download masks (TIF)
Download outlines (PNG)
Outlines
Cellpose flows
Click on an example to try it
Notes:
you can load and process 2D, multi-channel tifs.
the smallest dimension of a tif --> channels
you can upload multiple files and download a zip of the segmentations
install Cellpose-SAM locally for full functionality.
